Transcript: lnc-MBOAT1-2:25

Basic information

LNCipedia transcript ID: lnc-MBOAT1-2:25 
LNCipedia gene ID: lnc-MBOAT1-2
Location (hg38): chr6:19534944-19640583
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000432171.1; RP1-167F1.2-001; OTTHUMT00000039973.1; NONHSAT107995
Alternative gene names: ENSG00000226786.1; RP1-167F1.2; OTTHUMG00000014329.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.3597 non-coding 
CPAT coding probability 6.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MBOAT1-2:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBOAT1-4:1
4.0 lnc-MBOAT1-4:1
4.1 lnc-MBOAT1-2:25
5.0 lnc-MBOAT1-2:25
5.1 lnc-C6orf62-95:27
5.2 lnc-MBOAT1-2:25