Transcript: lnc-MAT2B-2:1

Basic information

LNCipedia transcript ID: lnc-MAT2B-2:1 
LNCipedia gene ID: lnc-MAT2B-2
Ensembl Gene ID: ENSG00000253538
Ensembl Transcript ID: ENST00000522426
Location (hg38): chr5:164209631-164211892
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522426; ENST00000522426.1; CTB-32P11.1-001; OTTHUMT00000370921.1; NONHSAT104921
Alternative gene names: ENSG00000253538; CTB-32P11.1; ENSG00000253538.1; OTTHUMG00000162874.1; AC008662.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.0268 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAT2B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAT2B-2:1
3.1 lnc-MAT2B-2:1
4.0 lnc-MAT2B-2:1
4.1 lnc-MAT2B-2:1
5.0 lnc-MAT2B-2:1
5.1 lnc-ATP6V0E1-132:1
5.2 lnc-MAT2B-2:1