Transcript: lnc-MAST4-5:6

Basic information

LNCipedia transcript ID: lnc-MAST4-5:6 
LNCipedia gene ID: lnc-MAST4-5
Ensembl Gene ID: ENSG00000249364
Ensembl Transcript ID: ENST00000513234
Location (hg38): chr5:67793214-67801058
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1556 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513234.1; RP11-434D9.1-004; OTTHUMT00000368618.1; ENST00000513234.5
Alternative gene names: ENSG00000249364.1; RP11-434D9.1; OTTHUMG00000162352.1; ENSG00000249364.5; AC112206.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.1363 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAST4-5:6 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-404L6.2.1-1:3
4.0 lnc-MAST4-5:6
4.1 lnc-MAST4-5:6
5.0 lnc-MAST4-5:6
5.1 lnc-NLN-35:13
5.2 lnc-MAST4-5:6