Transcript: lnc-MAST4-5:5

Basic information

LNCipedia transcript ID: lnc-MAST4-5:5 
LNCipedia gene ID: lnc-MAST4-5
RefSeq ID: NR_130779
Location (hg38): chr5:67793213-67801058
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1557 bp
Exons: 3
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT101821; NR_130779.1
Alternative gene names: LOC101928858


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.1363 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAST4-5:5 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-404L6.2.1-1:9
4.0 lnc-MAST4-5:5
4.1 lnc-MAST4-5:5
5.0 lnc-MAST4-5:5
5.1 lnc-NLN-35:12
5.2 lnc-MAST4-5:5