Transcript: lnc-MAST4-5:16

Basic information

LNCipedia transcript ID: lnc-MAST4-5:16 
LNCipedia gene ID: lnc-MAST4-5
Location (hg38): chr5:67793163-67811774
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7530 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249364.1|HBMT00001139861.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.2171 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAST4-5:16 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MAST4-5:16
5.0 lnc-MAST4-5:16
5.1 lnc-NLN-35:11
5.2 lnc-MAST4-5:16