Transcript: lnc-MAP3K9-10:1

Basic information

LNCipedia transcript ID: lnc-MAP3K9-10:1 
LNCipedia gene ID: lnc-MAP3K9-10
Ensembl Gene ID: ENSG00000269927
Ensembl Transcript ID: ENST00000602957
Location (hg38): chr14:71141125-71143253
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2129 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT037607; ENST00000602957.1
Alternative gene names: ENSG00000269927.1; RP6-91H8.3; AC004817.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.8571 non-coding 
CPAT coding probability 5.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K9-10:1
4.0 lnc-MAP3K9-10:1
4.1 lnc-MAP3K9-10:1
5.0 lnc-MAP3K9-10:1
5.1 lnc-ABCD4-44:3
5.2 lnc-MAP3K9-10:1