Transcript: lnc-MAP3K8-3:1

Basic information

LNCipedia transcript ID: lnc-MAP3K8-3:1 
LNCipedia gene ID: lnc-MAP3K8-3
Location (hg38): chr10:30655489-30657535
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 486 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00017807; ENST00000450581; ENST00000450581.1; RP11-14C22.3-001; OTTHUMT00000047435.1; NONHSAT012588
Alternative gene names: XLOC_008438; linc-ZEB1-3; ENSG00000230998; RP11-14C22.3; ENSG00000230998.1; OTTHUMG00000017899.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.4245 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K8-2:1
3.1 lnc-MAP3K8-3:1
4.0 lnc-MAP3K8-3:1
4.1 lnc-MAP3K8-3:1
5.0 lnc-MAP3K8-3:1
5.1 lnc-NPY4R2-198:1
5.2 lnc-MAP3K8-3:1