Transcript: lnc-MAP3K3-2:4

Basic information

LNCipedia transcript ID: lnc-MAP3K3-2:4 
LNCipedia gene ID: lnc-MAP3K3-2
Location (hg38): chr17:63700293-63700621
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 329 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000032069.1|FTMT26800003701.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -227.2951 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K3-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MAP3K3-2:4
5.0 lnc-MAP3K3-2:4
5.1 lnc-TANC2-12:2
5.2 lnc-MAP3K3-2:4