Transcript: lnc-MAP1LC3B2-28:9

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:9 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg38): chr12:116533454-116534359
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000196668.3|ENST00000489452.1
Alternative gene names: FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -151.2202 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:9 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00173:15
5.0 LINC00173:15
5.1 lnc-MAP1LC3B2-14:9
5.2 lnc-MAP1LC3B2-28:9