Transcript: lnc-MAP1LC3B2-28:23

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:23 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg38): chr12:116548101-116554381
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 737 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000258102.1|ENST00000547114.1
Alternative gene names: FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -176.7934 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:23 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00173:23
5.0 LINC00173:23
5.1 lnc-MAP1LC3B2-14:23
5.2 lnc-MAP1LC3B2-28:23