Transcript: lnc-MAP1LC3B2-28:17

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:17 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg38): chr12:116536020-116536723
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 704 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT030949; FPKM1_group_7232_transcript_2
Alternative gene names: FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.861 non-coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:17 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP1LC3B2-4:3
4.0 LINC00173:10
4.1 LINC00173:10
5.0 LINC00173:10
5.1 lnc-MAP1LC3B2-14:17
5.2 lnc-MAP1LC3B2-28:17