Transcript: lnc-MAP1LC3B2-28:15

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:15 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg38): chr12:116533532-116534083
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 203 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1568:1
Alternative gene names: FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -231.7686 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:15 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00173:8
4.1 LINC00173:8
5.0 LINC00173:8
5.1 lnc-MAP1LC3B2-14:15
5.2 lnc-MAP1LC3B2-28:15