Transcript: lnc-MAN2A1-2:1

Basic information

LNCipedia transcript ID: lnc-MAN2A1-2:1 
LNCipedia gene ID: lnc-MAN2A1-2
Ensembl Gene ID: ENSG00000248876
Ensembl Transcript ID: ENST00000505002
Location (hg38): chr5:109470843-109471586
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 744 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505002; ENST00000505002.1; RP11-231G15.3-001; OTTHUMT00000371718.1; NONHSAT103145
Alternative gene names: ENSG00000248876; RP11-231G15.3; ENSG00000248876.1; OTTHUMG00000163114.1; AC091917.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.3246 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAN2A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAN2A1-2:1
3.1 lnc-MAN2A1-2:1
4.0 lnc-MAN2A1-2:1
4.1 lnc-MAN2A1-2:1
5.0 lnc-MAN2A1-2:1
5.1 lnc-AP3S1-85:1
5.2 lnc-MAN2A1-2:1