Transcript: lnc-MAN2A1-1:2

Basic information

LNCipedia transcript ID: lnc-MAN2A1-1:2 
LNCipedia gene ID: lnc-MAN2A1-1
Location (hg38): chr5:109907557-109912265
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT103156; FPKM1_group_26141_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.1533 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAN2A1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC011366.3.1-1:2
4.0 lnc-AC011366.3.1-1:2
4.1 lnc-AC011366.3.1-1:2
5.0 lnc-AC011366.3.1-1:2
5.1 lnc-AP3S1-77:1
5.2 lnc-MAN2A1-1:2