Transcript: lnc-MAMDC2-4:1

Basic information

LNCipedia transcript ID: lnc-MAMDC2-4:1 
LNCipedia gene ID: lnc-MAMDC2-4
Ensembl Gene ID: ENSG00000274421
Ensembl Transcript ID: ENST00000622201
Location (hg38): chr9:70310875-70312120
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1246 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622201.1
Alternative gene names: ENSG00000274421.1; RP11-386J22.3; AL162390.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.9442 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAMDC2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MAMDC2-4:1
4.1 lnc-MAMDC2-4:1
5.0 lnc-MAMDC2-4:1
5.1 lnc-TMC1-26:1
5.2 lnc-MAMDC2-4:1