Transcript: lnc-MAGEA1-1:2

Basic information

LNCipedia transcript ID: lnc-MAGEA1-1:2 
LNCipedia gene ID: lnc-MAGEA1-1
Location (hg38): chrX:153225659-153230056
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 921 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00017103; ENST00000420160; ENST00000420160.1; U82670.4-001; OTTHUMT00000060942.3; NONHSAT139061
Alternative gene names: XLOC_008260; linc-PNMA6A; ENSG00000237736; U82670.4; ENSG00000237736.1; OTTHUMG00000024194.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.5 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAGEA1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAGEA1-1:2
3.1 lnc-MAGEA1-1:2
4.0 lnc-MAGEA1-1:2
4.1 lnc-MAGEA1-1:2
5.0 lnc-MAGEA1-1:2
5.1 lnc-MAGEA11-40:2
5.2 lnc-MAGEA1-1:2