Transcript: lnc-MAGEA1-1:1

Basic information

LNCipedia transcript ID: lnc-MAGEA1-1:1 
LNCipedia gene ID: lnc-MAGEA1-1
Ensembl Gene ID: ENSG00000273877
Ensembl Transcript ID: ENST00000620118
Location (hg38): chrX:153225649-153229714
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017104; ENST00000420988; ENST00000420988.1; U82670.4-002; OTTHUMT00000060943.3; NONHSAT139062; ENST00000620118.4
Alternative gene names: XLOC_008260; linc-PNMA6A; ENSG00000237736; U82670.4; ENSG00000237736.1; OTTHUMG00000024194.3; ENSG00000273877.4; RP11-635O16.2; AC236972.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5373 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAGEA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAGEA1-1:1
3.1 lnc-MAGEA1-1:1
4.0 lnc-MAGEA1-1:1
4.1 lnc-MAGEA1-1:1
5.0 lnc-MAGEA1-1:1
5.1 lnc-MAGEA11-40:1
5.2 lnc-MAGEA1-1:1