Transcript: lnc-MACC1-3:4

Basic information

LNCipedia transcript ID: lnc-MACC1-3:4 
LNCipedia gene ID: lnc-MACC1-3
Ensembl Gene ID: ENSG00000271133
Ensembl Transcript ID: ENST00000605357
Location (hg38): chr7:20328299-20331681
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 737 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT119423; ENST00000605357.1; ENST00000605357.5
Alternative gene names: ENSG00000271133.1; CTA-293F17.1; ENSG00000271133.5; AC004130.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -297.2382 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MACC1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MACC1-3:4
4.0 lnc-MACC1-3:4
4.1 lnc-MACC1-3:4
5.0 lnc-MACC1-3:4
5.1 lnc-SNX13-20:9
5.2 lnc-MACC1-3:4