Transcript: lnc-LYZL1-15:6

Basic information

LNCipedia transcript ID: lnc-LYZL1-15:6 
LNCipedia gene ID: lnc-LYZL1-15
Location (hg38): chr10:29409547-29424178
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3307 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000438399.1; RP11-534G20.3-002; OTTHUMT00000047384.1; NONHSAT012520
Alternative gene names: ENSG00000224597.3; RP11-534G20.3; OTTHUMG00000017881.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.2659 non-coding 
CPAT coding probability 45.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LYZL1-15:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYZL1-3:3
4.0 SVIL-AS1:15
4.1 SVIL-AS1:15
5.0 SVIL-AS1:15
5.1 lnc-NPY4R2-566:6
5.2 lnc-LYZL1-15:6