Transcript: lnc-LYST-4:3

Basic information

LNCipedia transcript ID: lnc-LYST-4:3 
LNCipedia gene ID: lnc-LYST-4
Location (hg38): chr1:235826582-235827938
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 752 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000446945.1; LYST-IT1-001; OTTHUMT00000099243.1; NONHSAT010378
Alternative gene names: ENSG00000226135.1; LYST-IT1; OTTHUMG00000041433.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.7142 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYST-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NID1-4:1
4.0 lnc-LYST-4:3
4.1 lnc-LYST-4:3
5.0 lnc-LYST-4:3
5.1 lnc-MTRNR2L11-16:3
5.2 lnc-LYST-4:3