Transcript: lnc-LYPD6-2:20

Basic information

LNCipedia transcript ID: lnc-LYPD6-2:20 
LNCipedia gene ID: lnc-LYPD6-2
Location (hg38): chr2:149589104-149593973
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT147116
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.8778 non-coding 
CPAT coding probability 6.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYPD6-2:20 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYPD6-6:2
4.0 lnc-LYPD6-6:2
4.1 lnc-LYPD6-2:20
5.0 lnc-LYPD6-2:20
5.1 lnc-KCNJ3-41:16
5.2 lnc-LYPD6-2:20