Transcript: lnc-LYPD6-2:18

Basic information

LNCipedia transcript ID: lnc-LYPD6-2:18 
LNCipedia gene ID: lnc-LYPD6-2
Location (hg38): chr2:149587887-149848510
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2249 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231969.1|MICT00000200813.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.2261 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYPD6-2:18 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LYPD6-2:18
5.0 lnc-LYPD6-2:18
5.1 lnc-KCNJ3-41:14
5.2 lnc-LYPD6-2:18