Transcript: lnc-LYPD6-2:1

Basic information

LNCipedia transcript ID: lnc-LYPD6-2:1 
LNCipedia gene ID: lnc-LYPD6-2
Ensembl Gene ID: ENSG00000231969
Ensembl Transcript ID: ENST00000449714
Location (hg38): chr2:149587196-149848233
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1022 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449714.1; AC144449.1-001; OTTHUMT00000332308.1; NONHSAT074904
Alternative gene names: ENSG00000231969.1; AC144449.1; OTTHUMG00000153745.1; AC007364.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.4978 non-coding 
CPAT coding probability 46.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LYPD6-2:1 yes no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYPD6-2:1
4.0 lnc-LYPD6-2:1
4.1 lnc-LYPD6-2:1
5.0 lnc-LYPD6-2:1
5.1 lnc-KCNJ3-41:1
5.2 lnc-LYPD6-2:1