Transcript: lnc-LY86-4:5

Basic information

LNCipedia transcript ID: lnc-LY86-4:5 
LNCipedia gene ID: lnc-LY86-4
Location (hg38): chr6:6692744-6713975
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 898 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000432823; ENST00000432823.1; RP1-80N2.2-001; OTTHUMT00000039763.1; NONHSAT107558
Alternative gene names: ENSG00000226281; RP1-80N2.2; ENSG00000226281.1; OTTHUMG00000014191.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.0574 non-coding 
CPAT coding probability 4.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LY86-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LY86-3:1
3.1 lnc-LY86-3:1
4.0 lnc-LY86-4:5
4.1 lnc-LY86-4:5
5.0 lnc-LY86-4:5
5.1 lnc-PRPF4B-78:7
5.2 lnc-LY86-4:5