Transcript: lnc-LSR-1:6

Basic information

LNCipedia transcript ID: lnc-LSR-1:6 
LNCipedia gene ID: lnc-LSR-1
Location (hg38): chr19:35212183-35215892
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1861 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000039130.1|HBMT00000706827.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.7504 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LSR-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LSR-1:6
5.0 lnc-LSR-1:6
5.1 lnc-GPR42-13:5
5.2 lnc-LSR-1:6