Transcript: lnc-LSR-1:3

Basic information

LNCipedia transcript ID: lnc-LSR-1:3 
LNCipedia gene ID: lnc-LSR-1
Location (hg38): chr19:35205156-35215871
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 710 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027003; NONHSAT065811
Alternative gene names: XLOC_013049; linc-LSR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.682 non-coding 
CPAT coding probability 4.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LSR-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LSR-1:2
3.1 lnc-LSR-1:3
4.0 lnc-LSR-1:3
4.1 lnc-LSR-1:3
5.0 lnc-LSR-1:3
5.1 lnc-GPR42-13:2
5.2 lnc-LSR-1:3