Transcript: lnc-LRRFIP2-3:2

Basic information

LNCipedia transcript ID: lnc-LRRFIP2-3:2 
LNCipedia gene ID: lnc-LRRFIP2-3
Ensembl Gene ID: ENSG00000270194
Ensembl Transcript ID: ENST00000604992
Location (hg38): chr3:37241789-37244177
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2389 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT089008; ENST00000604992.1
Alternative gene names: ENSG00000270194.1; RP11-259K5.2; AC097359.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.419 non-coding 
CPAT coding probability 10.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRFIP2-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRFIP2-3:2
4.0 lnc-LRRFIP2-3:2
4.1 lnc-LRRFIP2-3:2
5.0 lnc-LRRFIP2-3:2
5.1 lnc-OSBPL10-48:3
5.2 lnc-LRRFIP2-3:2