Transcript: lnc-LRFN2-4:1

Basic information

LNCipedia transcript ID: lnc-LRFN2-4:1 
LNCipedia gene ID: lnc-LRFN2-4
Ensembl Gene ID: ENSG00000237947
Ensembl Transcript ID: ENST00000438818
Location (hg38): chr6:40713411-40715363
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438818; ENST00000438818.1; RP11-570K4.1-001; OTTHUMT00000040490.1; NONHSAT112691
Alternative gene names: ENSG00000237947; RP11-570K4.1; ENSG00000237947.1; OTTHUMG00000014664.1; AL583854.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.2243 non-coding 
CPAT coding probability 5.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRFN2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRFN2-4:1
3.1 lnc-LRFN2-4:1
4.0 lnc-LRFN2-4:1
4.1 lnc-LRFN2-4:1
5.0 lnc-LRFN2-4:1
5.1 lnc-TREML2-18:1
5.2 lnc-LRFN2-4:1