Transcript: lnc-LRCH1-3:1

Basic information

LNCipedia transcript ID: lnc-LRCH1-3:1 
LNCipedia gene ID: lnc-LRCH1-3
Location (hg38): chr13:46455203-46461022
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 461 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000416521.1; RP11-189B4.5-001; OTTHUMT00000044821.1
Alternative gene names: ENSG00000243079.1; RP11-189B4.5; OTTHUMG00000016874.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.7262 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRCH1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRCH1-3:1
4.0 lnc-LRCH1-3:1
4.1 lnc-LRCH1-3:1
5.0 lnc-LRCH1-3:1
5.1 lnc-KL-150:1
5.2 lnc-LRCH1-3:1