Transcript: lnc-LPCAT1-4:28

Basic information

LNCipedia transcript ID: lnc-LPCAT1-4:28 
LNCipedia gene ID: lnc-LPCAT1-4
Location (hg38): chr5:1578791-1585233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 944 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT100039
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.0678 non-coding 
CPAT coding probability 30.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LPCAT1-4:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LPCAT1-3:24
4.0 lnc-LPCAT1-3:24
4.1 lnc-LPCAT1-3:24
5.0 lnc-LPCAT1-3:24
5.1 lnc-IRX2-13:28
5.2 lnc-LPCAT1-4:28