Transcript: lnc-LOX-1:2

Basic information

LNCipedia transcript ID: lnc-LOX-1:2 
LNCipedia gene ID: lnc-LOX-1
Ensembl Gene ID: ENSG00000247311
Ensembl Transcript ID: ENST00000504829
Location (hg38): chr5:122128762-122154856
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 731 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504829.1; CTC-441N14.2-001; OTTHUMT00000371198.1; NONHSAT103464
Alternative gene names: ENSG00000247311.2; CTC-441N14.2; OTTHUMG00000162968.1; AC010255.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.903 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LOX-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LOX-1:2
4.0 lnc-LOX-1:2
4.1 lnc-LOX-1:2
5.0 lnc-LOX-1:2
5.1 lnc-LOX-1:2
5.2 lnc-LOX-1:2