Transcript: lnc-LMBR1-3:3

Basic information

LNCipedia transcript ID: lnc-LMBR1-3:3 
LNCipedia gene ID: lnc-LMBR1-3
Ensembl Gene ID: ENSG00000228569
Ensembl Transcript ID: ENST00000426187
Location (hg38): chr7:156432523-156435833
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013278; ENST00000426187; ENST00000426187.1; AC073133.2-001; OTTHUMT00000322680.1; NONHSAT124413
Alternative gene names: XLOC_006670; linc-SHH-4; ENSG00000228569; AC073133.2; ENSG00000228569.1; OTTHUMG00000151447.1; AC073133.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.119 non-coding 
CPAT coding probability 8.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMBR1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf13-3:1
3.1 lnc-C7orf13-3:1
4.0 lnc-C7orf13-3:1
4.1 lnc-C7orf13-3:1
5.0 lnc-C7orf13-3:1
5.1 lnc-LMBR1-3:2
5.2 lnc-LMBR1-3:3