Transcript: lnc-LINC00483-1:18

Basic information

LNCipedia transcript ID: lnc-LINC00483-1:18 
LNCipedia gene ID: lnc-LINC00483-1
Location (hg38): chr17:50759942-50760164
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 223 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT054718; FPKM1_group_12937_transcript_1
Alternative gene names: FLJ20694


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.0908 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LINC00483-1:18 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD40-3:1
4.0 lnc-ANKRD40-3:1
4.1 LINC00483:18
5.0 LINC00483:18
5.1 lnc-ANKRD40-5:18
5.2 lnc-LINC00483-1:18