Transcript: lnc-LINC00483-1:17

Basic information

LNCipedia transcript ID: lnc-LINC00483-1:17 
LNCipedia gene ID: lnc-LINC00483-1
RefSeq ID: NR_073199
Location (hg38): chr17:50761034-50767515
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 825 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT054720; NR_073199; NR_073199.1
Alternative gene names: FLJ20694; LINC00483


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4013 non-coding 
CPAT coding probability 62.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LINC00483-1:17 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD40-1:7
4.0 LINC00483:7
4.1 LINC00483:7
5.0 LINC00483:7
5.1 lnc-ANKRD40-5:17
5.2 lnc-LINC00483-1:17