Transcript: lnc-LIMS4-1:7

Basic information

LNCipedia transcript ID: lnc-LIMS4-1:7 
LNCipedia gene ID: lnc-LIMS4-1
Location (hg38): chr2:110406750-110433673
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 676 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000469759.1; RP13-1039J1.2-005; OTTHUMT00000338359.1; NONHSAT073213
Alternative gene names: ENSG00000184115.11; RP13-1039J1.2; OTTHUMG00000167880.1; ENSG00000184115.12; ENSG00000184115.16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3025 non-coding 
CPAT coding probability 24.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIMS4-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC108938.5.1-1:4
4.0 lnc-AC108938.5.1-1:4
4.1 lnc-AC108938.5.1-1:4
5.0 lnc-AC108938.5.1-1:4
5.1 lnc-EN1-88:7
5.2 lnc-LIMS4-1:7