Transcript: lnc-LIMS3-2:9

Basic information

LNCipedia transcript ID: lnc-LIMS3-2:9 
LNCipedia gene ID: lnc-LIMS3-2
Ensembl Gene ID: ENSG00000282304
Ensembl Transcript ID: ENST00000562613
Location (hg38): chr2:110245697-110283768
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562613.1; RP11-1223D19.1-010; OTTHUMT00000431540.1; NONHSAT073185; ENST00000562613.2
Alternative gene names: ENSG00000261760.1; RP11-1223D19.1; OTTHUMG00000176121.1; ENSG00000261760.2; ENSG00000282304.1; RP11-1223D19.3; AC140479.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.0004 non-coding 
CPAT coding probability 29.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIMS3-2:9 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3-2:9
4.0 lnc-LIMS3-2:9
4.1 lnc-LIMS3-2:9
5.0 lnc-LIMS3-2:9
5.1 lnc-SULT1C4-24:11
5.2 lnc-LIMS3-2:9