Transcript: lnc-LIMS3-1:15

Basic information

LNCipedia transcript ID: lnc-LIMS3-1:15 
LNCipedia gene ID: lnc-LIMS3-1
Location (hg38): chr2:109937835-109964740
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 676 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000435951.1; AC013271.3-007; OTTHUMT00000330200.1; NONHSAT073158
Alternative gene names: ENSG00000186148.6; AC013271.3; OTTHUMG00000153222.1; ENSG00000186148.7; ENSG00000186148.11; ENSG00000186148.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3025 non-coding 
CPAT coding probability 24.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIMS3-1:15 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3.1-1:5
4.0 lnc-LIMS3-1:15
4.1 lnc-LIMS3-1:15
5.0 lnc-LIMS3-1:15
5.1 lnc-SULT1C4-22:10
5.2 lnc-LIMS3-1:15