Transcript: lnc-LIMK2-5:3

Basic information

LNCipedia transcript ID: lnc-LIMK2-5:3 
LNCipedia gene ID: lnc-LIMK2-5
Location (hg38): chr22:31490155-31491578
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1424 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000057472.1|HBMT00000939983.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.0673 non-coding 
CPAT coding probability 9.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIMK2-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC005003.1-5:2
5.0 lnc-AC005003.1-5:2
5.1 lnc-LIMK2-8:2
5.2 lnc-LIMK2-5:3