Transcript: lnc-LIMCH1-1:1

Basic information

LNCipedia transcript ID: lnc-LIMCH1-1:1 
LNCipedia gene ID: lnc-LIMCH1-1
Ensembl Gene ID: ENSG00000249122
Ensembl Transcript ID: ENST00000510602
Location (hg38): chr4:41750345-41757341
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007520; ENST00000510602.1; RP11-227F19.2-001; OTTHUMT00000360954.1; NONHSAT096171
Alternative gene names: XLOC_003521; linc-TMEM33; ENSG00000249122.1; RP11-227F19.2; OTTHUMG00000160525.1; AC105389.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.1076 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIMCH1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LIMCH1-1:1
3.1 lnc-LIMCH1-1:1
4.0 lnc-LIMCH1-1:1
4.1 lnc-LIMCH1-1:1
5.0 lnc-LIMCH1-1:1
5.1 lnc-GABRB1-32:1
5.2 lnc-LIMCH1-1:1