Transcript: lnc-LEKR1-43:1

Basic information

LNCipedia transcript ID: lnc-LEKR1-43:1 
LNCipedia gene ID: lnc-LEKR1-43
Ensembl Gene ID: ENSG00000241770
Ensembl Transcript ID: ENST00000480817
Location (hg38): chr3:157163452-157169133
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 320 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000480817.1; RP11-555M1.3-001; OTTHUMT00000351884.1; NONHSAT092903
Alternative gene names: ENSG00000241770.1; RP11-555M1.3; OTTHUMG00000158715.1; AC104411.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.1484 non-coding 
CPAT coding probability 7.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LEKR1-43:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEKR1-3:1
4.0 lnc-LEKR1-3:1
4.1 lnc-PTX3-4:14
5.0 lnc-PTX3-4:14
5.1 lnc-LEKR1-39:1
5.2 lnc-LEKR1-43:1