Transcript: lnc-LEF1-3:2

Basic information

LNCipedia transcript ID: lnc-LEF1-3:2 
LNCipedia gene ID: lnc-LEF1-3
Ensembl Gene ID: ENSG00000245293
Ensembl Transcript ID: ENST00000499098
RefSeq ID: NR_125929
Location (hg38): chr4:107863479-107932119
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2810 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499098.1; RP11-286E11.1-001; OTTHUMT00000363694.1; NONHSAT097724; NR_125929; NR_125929.1
Alternative gene names: ENSG00000245293.2; RP11-286E11.1; OTTHUMG00000161085.2; AC096564.1; LOC101929595


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.3576 non-coding 
CPAT coding probability 7.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LEF1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEF1-3:2
4.0 lnc-LEF1-3:2
4.1 lnc-LEF1-3:2
5.0 lnc-LEF1-3:2
5.1 lnc-TIFA-33:18
5.2 lnc-LEF1-3:2