Transcript: lnc-LBX1-1:1

Basic information

LNCipedia transcript ID: lnc-LBX1-1:1 
LNCipedia gene ID: lnc-LBX1-1
Ensembl Gene ID: ENSG00000229649
Ensembl Transcript ID: ENST00000422661
RefSeq ID: NR_120621
Location (hg38): chr10:101252821-101263550
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2222 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017749; ENST00000422661; ENST00000422661.1; RP11-107I14.4-001; OTTHUMT00000049934.1; NONHSAT016043; NR_120621; NR_120621.1
Alternative gene names: XLOC_008923; linc-LBX1-1; ENSG00000229649; RP11-107I14.4; ENSG00000229649.1; OTTHUMG00000018930.1; AL133387.2; LOC101927419


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.8247 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LBX1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LBX1-1:1
3.1 lnc-LBX1-1:1
4.0 lnc-LBX1-1:1
4.1 lnc-LBX1-1:1
5.0 lnc-LBX1-1:1
5.1 lnc-CPN1-47:1
5.2 lnc-LBX1-1:1