Transcript: lnc-LARGE1-2:2

Basic information

LNCipedia transcript ID: lnc-LARGE1-2:2 
LNCipedia gene ID: lnc-LARGE1-2
Location (hg38): chr22:34276838-34284791
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1766 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029687; NONHSAT085031
Alternative gene names: XLOC_014355; linc-LARGE-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.6481 non-coding 
CPAT coding probability 4.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LARGE1-2:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LARGE-2:2
3.1 lnc-LARGE-2:2
4.0 lnc-LARGE-2:2
4.1 lnc-LARGE-2:2
5.0 lnc-LARGE-2:2
5.1 lnc-SYN3-18:2
5.2 lnc-LARGE1-2:2