Transcript: lnc-LAMB3-2:4

Basic information

LNCipedia transcript ID: lnc-LAMB3-2:4 
LNCipedia gene ID: lnc-LAMB3-2
Location (hg38): chr1:209540693-209541430
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 219 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT009221; FPKM1_group_2213_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -560.3805 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMB3-2:4 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Liu (2014), A computational framework to infer human disease-associated long noncoding RNAs., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMB3-2:4
4.0 lnc-LAMB3-2:4
4.1 lnc-LAMB3-2:4
5.0 lnc-LAMB3-2:4
5.1 lnc-IRF6-12:9
5.2 lnc-LAMB3-2:4