Transcript: lnc-KY-2:1

Basic information

LNCipedia transcript ID: lnc-KY-2:1 
LNCipedia gene ID: lnc-KY-2
Ensembl Gene ID: ENSG00000240086
Ensembl Transcript ID: ENST00000473001
Location (hg38): chr3:135379046-135439888
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000473001; ENST00000473001.1; RP11-657O9.1-001; OTTHUMT00000357681.1; NONHSAT092267
Alternative gene names: ENSG00000240086; RP11-657O9.1; ENSG00000240086.1; OTTHUMG00000159842.1; ENSG00000240086.5; AC128689.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.3863 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KY-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSL2-2:1
3.1 lnc-KY-2:1
4.0 lnc-KY-2:1
4.1 lnc-KY-2:1
5.0 lnc-KY-2:1
5.1 lnc-MSL2-10:1
5.2 lnc-KY-2:1