Transcript: lnc-KRTAP12-4-1:1

Basic information

LNCipedia transcript ID: lnc-KRTAP12-4-1:1 
LNCipedia gene ID: lnc-KRTAP12-4-1
Location (hg38): chr21:44652386-44660844
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3466 bp
Exons: 3
Sources: NONCODE v4; Nielsen et al.,2014
Alternative transcript names: NONHSAT082873; ucscGeneNc_uc002zho_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.7872 non-coding 
CPAT coding probability 76.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KRTAP12-4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRTAP12-4-1:1
4.0 lnc-KRTAP12-4-1:1
4.1 lnc-KRTAP12-4-1:1
5.0 lnc-KRTAP12-4-1:1
5.1 lnc-POFUT2-17:1
5.2 lnc-KRTAP12-4-1:1