Transcript: lnc-KLF4-15:3

Basic information

LNCipedia transcript ID: lnc-KLF4-15:3 
LNCipedia gene ID: lnc-KLF4-15
Ensembl Gene ID: ENSG00000237062
Ensembl Transcript ID: ENST00000446206
Location (hg38): chr9:106615078-106615806
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 597 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015864; ENST00000446206; ENST00000446206.1; RP11-308N19.3-001; OTTHUMT00000053527.1; NONHSAT133841
Alternative gene names: XLOC_007819; linc-ABCA1-6; ENSG00000237062; RP11-308N19.3; ENSG00000237062.1; OTTHUMG00000020434.1; AL512649.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.19 non-coding 
CPAT coding probability 6.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF4-15:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF4-5:3
3.1 lnc-KLF4-5:3
4.0 lnc-KLF4-5:3
4.1 lnc-KLF4-5:3
5.0 lnc-KLF4-5:3
5.1 lnc-SLC46A2-86:3
5.2 lnc-KLF4-15:3