Transcript: lnc-KL-3:1

Basic information

LNCipedia transcript ID: lnc-KL-3:1 
LNCipedia gene ID: lnc-KL-3
Location (hg38): chr13:33333846-33335266
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 466 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000443576; ENST00000443576.1; RP11-141M1.1-001; OTTHUMT00000044444.1; NONHSAT033143
Alternative gene names: ENSG00000227911; RP11-141M1.1; ENSG00000227911.1; OTTHUMG00000016711.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.9654 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KL-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KL-1:1
3.1 lnc-KL-3:1
4.0 lnc-KL-3:1
4.1 lnc-KL-3:1
5.0 lnc-KL-3:1
5.1 lnc-KL-3:1
5.2 lnc-KL-3:1