Transcript: lnc-KIAA1211L-1:3

Basic information

LNCipedia transcript ID: lnc-KIAA1211L-1:3 
LNCipedia gene ID: lnc-KIAA1211L-1
Ensembl Gene ID: ENSG00000226791
Ensembl Transcript ID: ENST00000624259
Location (hg38): chr2:98762368-98772279
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1105 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624259.3
Alternative gene names: ENSG00000226791.6; AC109826.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.2573 non-coding 
CPAT coding probability 8.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIAA1211L-1:3 no no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C2orf55-1:10
4.1 lnc-C2orf55-1:10
5.0 lnc-C2orf55-1:10
5.1 lnc-AFF3-18:3
5.2 lnc-KIAA1211L-1:3