Transcript: lnc-KIAA1211L-1:10

Basic information

LNCipedia transcript ID: lnc-KIAA1211L-1:10 
LNCipedia gene ID: lnc-KIAA1211L-1
Location (hg38): chr2:98761938-98769010
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 926 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00003338; ENST00000419865; ENST00000419865.1; AC109826.1-001; OTTHUMT00000329948.1; NONHSAT072722
Alternative gene names: XLOC_002221; linc-MGAT4A; ENSG00000226791; AC109826.1; ENSG00000226791.2; OTTHUMG00000153173.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.7156 non-coding 
CPAT coding probability 8.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIAA1211L-1:10 no no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf55-1:5
3.1 lnc-C2orf55-1:5
4.0 lnc-C2orf55-1:5
4.1 lnc-C2orf55-1:5
5.0 lnc-C2orf55-1:5
5.1 lnc-AFF3-18:10
5.2 lnc-KIAA1211L-1:10